This transcriptome assembly was originally hosted on the Fagaceae Genomics Web (FGW), which has now been archived. Sequence information is maintained here in downloadable format only.

Publications:
Barakat A, Staton M, Cheng CH, Park J, Yassin NB, Ficklin S, Yeh CC, Hebard F, Baier K, Powell W, Schuster SC. Chestnut resistance to the blight disease: insights from transcriptome analysis. BMC Plant Biology. 2012 Mar 19;12(1):1.

Barakat A, DiLoreto DS, Zhang Y, Smith C, Baier K, Powell WA, Wheeler N, Sederoff R, Carlson JE. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC Plant Biology. 2009 May 9;9(1):1.

Transcriptome Information

FGW Name CC454 Unigene V3
Date 2008-08-15
Software SeqManPro
Number of Contigs 48,335
Libraries Included in Assembly 14

Download assembled data:

Raw data from the 454 platform may be downloaded from NCBI SRA, linked below.

Library Description Library Code Platform 454 Reads 454 Bases
Chinese Chestnut blight canker tissue CCCanker 454 GS FLX 235,635 26M
Chinese Chestnut healthy stem 1 CCMHS 454 GS FLX 228,594 59.6M
Chinese Chestnut healthy stem 2 CCNHS 454 GS FLX 259,859 67.2M
Chinese Chestnut whole plant tissues 1 CCWP1 454 GS FLX 60,445 15.8M
Chinese Chestnut whole plant tissues 2 CCWP2 454 GS FLX 53,939 14.1M

Raw data from the Sanger platform may be found by searching NCBI Genbank. Links to search results are provided below.

  • CMFMEa - Flower Library (213 sequences)
  • CMFMEb - Flower Library (1043 sequences)
  • CMFMEc - Flower Library (1030 sequences)
  • CMLMEa - Leaf Library (1029 sequences)
  • CMLMEb - Leaf Library (1316 sequences)
  • CMRMEa - Root Library (1379 sequences)
  • CMRMEb - Root Library (1071 sequences)
  • CMSMEa - Stem Library (1364 sequences)
  • CMSMEb - Stem Library (1035 sequences)