Chinese Chestnut Unigene version 081508 (CCall_v2)
This transcriptome assembly was originally hosted on the Fagaceae Genomics Web (FGW), which has now been archived. Sequence information is maintained here in downloadable format only.
Barakat A, Staton M, Cheng CH, Park J, Yassin NB, Ficklin S, Yeh CC, Hebard F, Baier K, Powell W, Schuster SC. Chestnut resistance to the blight disease: insights from transcriptome analysis. BMC Plant Biology. 2012 Mar 19;12(1):1.
Barakat A, DiLoreto DS, Zhang Y, Smith C, Baier K, Powell WA, Wheeler N, Sederoff R, Carlson JE. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC Plant Biology. 2009 May 9;9(1):1.
|FGW Name||CC454 Unigene V3|
|Number of Contigs||48,335|
|Libraries Included in Assembly||14|
Download assembled data:
Raw data from the 454 platform may be downloaded from NCBI SRA, linked below.
|Library Description||Library Code||Platform||454 Reads||454 Bases|
|Chinese Chestnut blight canker tissue||CCCanker||454 GS FLX||235,635||26M|
|Chinese Chestnut healthy stem 1||CCMHS||454 GS FLX||228,594||59.6M|
|Chinese Chestnut healthy stem 2||CCNHS||454 GS FLX||259,859||67.2M|
|Chinese Chestnut whole plant tissues 1||CCWP1||454 GS FLX||60,445||15.8M|
|Chinese Chestnut whole plant tissues 2||CCWP2||454 GS FLX||53,939||14.1M|
Raw data from the Sanger platform may be found by searching NCBI Genbank. Links to search results are provided below.
- CMFMEa - Flower Library (213 sequences)
- CMFMEb - Flower Library (1043 sequences)
- CMFMEc - Flower Library (1030 sequences)
- CMLMEa - Leaf Library (1029 sequences)
- CMLMEb - Leaf Library (1316 sequences)
- CMRMEa - Root Library (1379 sequences)
- CMRMEb - Root Library (1071 sequences)
- CMSMEa - Stem Library (1364 sequences)
- CMSMEb - Stem Library (1035 sequences)