Simple Sequence Repeats (SSR) prediction (A. rubra)
Summary
| Resource Type | Analysis |
|---|---|
| Name | Simple Sequence Repeats (SSR) prediction (A. rubra) |
| Program, Pipeline, Workflow or Method Name | SSR prediction pipeline |
| Program Version | n/a |
| Algorithm | |
| Organism | |
| Data Source |
|
| Date Performed | Thursday, July 5, 2018 - 08:51 |
SSRs were developed from the white alder transcriptome sequences. Bioinformatic processing included trimming, assembly, SSR identification and primer design, processing details including scripts are available.
Protocols followed the same methods published here:Publication: Lane T, Best T, Zembower N, Davitt J, Henry N, Xu Y, Koch J, Liang H, McGraw J, Schuster S, Shim D, Coggeshall MV, Carlson JE, Staton ME The green ash transcriptome and identification of genes responding to abiotic and biotic stresses. BMC genomics. 2016 Dec;17(1):702.
Download Files:
