Green Ash - Abiotic Stress Gene Expression
Summary
| Name | Green Ash - Abiotic Stress Gene Expression |
|---|---|
| Resource Type | Gene Expression Profile |
| Organism | |
| Publication | Lane T, Best T, Zembower N, Davitt J, Henry N, Xu Y, Koch J, Liang H, McGraw J, Schuster S, Shim D. The green ash transcriptome and identification of genes responding to abiotic and biotic stresses. BMC genomics. 2016 Dec;17(1):702. |
| Description | This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Stress experiments include ozone exposure, mechanical damage (wounding), heat, drought, and cold. A number of different adult tissue types were also profiled.
Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles. |
| Expression Data | |
| Program, Pipeline, Workflow or Method Name | HTSeq; RPKM |
| Program Version | n/a |
| Date Performed | Thursday, July 17, 2014 - 21:00 |
| Data Source |
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