Summary
Name
Blackgum - Abiotic Stress Gene Expression
Resource Type
Gene Expression Profile
Organism
Description
This project aims to elucidate the molecular response of hardwood tree seedlings to varying abiotic stresses. Ozone stress experiments were conducted. Expression profiles were determined by mapping reads to the set of assembled transcripts. Reads were mapped with Bowtie2 and counted using HTSeq. Values were normalized using RPKM (Reads Per Kilobase Million) for gene expression profiles.
Expression Data

This analysis contains expression data for 138819 features across 16 biosamples.

Program, Pipeline, Workflow or Method Name
HTSeq; RPKM
Program Version
n/a
Date Performed
Thursday, February 11, 2016 - 20:00
Data Source
Source Name
: Nyssa sylvatica 101314
Source Version
: 101314
Biosamples
NameTissueTreatmentDescription
BG-14DAy-125ppbleafozone exposure 125ppb for 14 daysBlack Gum -two yr old seedlings-open polinated-6pooled
BG-14DAy-225ppbleafozone exposure 225ppb for 14 daysBlack Gum -two yr old seedlings-open polinated-6pooled
BG-14DAy-80ppbleafozone exposure 80ppb for 14 daysBlack Gum -two yr old seedlings-open polinated-6pooled
BG-14DAy-Coleafcontrol chamber ozone 10ppb day14Black Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-125leafozone exposure 125ppb for 28 daysBlack Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-225leafozone exposure 225ppb for 28 daysBlack Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-80leafozone exposure 80ppb for 28 daysBlack Gum -two yr old seedlings-open polinated-6pooled
BG-28Day-COleafcontrol chamber ozone 10ppb day28Black Gum -two yr old seedlings-open polinated-6pooled
BG-29Day-125leafozone exposure 125ppb for 29 day + mecanical wounding on day 28Black Gum -two yr old seedlings-open polinated-6pooled
BG-29Day-225leafozone exposure 225ppb for 29 day + mecanical wounding on day 28Black Gum -two yr old seedlings-open polinated-6pooled

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