Sork, V. L., Fitz-Gibbon, S. T., Puiu, D., Crepeau, M., Gugger, P. F., Sherman, R., ... & Salzberg, S. L. (2016). First draft assembly and annotation of the genome of a California endemic oak Quercus lobata Née (Fagaceae). G3: Genes, Genomes, Genetics, g3-116.
Quercus lobata - Reference Genome
Resource Type
Genome Assembly
Program, Pipeline, Workflow or Method Name
Program Version
Date Performed
Thursday, April 6, 2017 - 21:00
Data Source
Source Name
: Qlobata_Genome1.0.fasta
Cross Reference
Description and Download

Quercus lobata Genome
Version 3.0, 1.0 and 0.5

Sork VL, Fitz-Gibbon ST, Puiu D, Crepeau M, Gugger PF, Sherman R, Stevens K, Langley CH, Pellegrini M, Salzberg SL. Quercus lobata Née (Fagaceae). G3: Genes|Genomes|Genetics. 2016 Nov 1;6(11):3485-95.

More information can be found at the Valley Oak Genome Project.

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The Valley Oak genome has two assemblies available. We are hosting genes and genomic scaffolds from version 1.0, which has not been haplotyped reduced and up to one third of the genome may be present in two copies. A haplotype reduced version, 0.5, is also available from the Valley Oak Genome Project and as downloads below. In 0.5, most genomic regions are represented once but up to 100Mb is missing. More information can be found in the publication and the Valley Oak Genome Project page.


Version 0.5

Valley Oak Genome 0.5 (reduced) sequences
Valley Oak Genome 0.5 (reduced) annotation
SNPs and SMVs

Version 1.0

Valley Oak Genome 1.0 sequences
Valley Oak Genome 1.0 annotation

Version 3.0

Coding Sequence 3.0 (fasta format)
Protein Sequences 3.0 (fasta format)
Genome 3.0 annotation
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