Summary
Publication
Stevens KA, Woeste K, Chakraborty S, Crepeau MW, Leslie CA, Martínez-García PJ, Puiu D, Romero-Severson J, Coggeshall M, Dandekar AM, Kluepfel D, Neale DB, Salzberg SL, Langley CH. Genomic Variation Among and Within Six Juglans Species. G3 (Bethesda). 2018 May 23. pii: g3.200030.2018. doi: 10.1534/g3.118.200030.
Name
Draft reference genomes for six Juglans species and Pterocarya stenoptera
Resource Type
Genome Assembly
Organism
Stevens et al. produced ‘draft’ genomes for Juglans regia, five additional Juglans species (J. nigra, J. sigillata, J. microcarpa, J. catheyensis, and J. hindsii) and the related species Pterocarya stenoptera. The J. regia assembly below is not annotated and is not the primary genome

Download assembled data:

Juglans sigillata

Juglans sigillata

Juglans microcarpa

Juglans hindsli

Juglans hindsli

Juglans cathayensis

Pterocarya stenoptera

Pterocarya stenoptera

Stevens et al. performed a reassembly of J. regia with new PacBio reads. This is provided as a supplement to their paper, but as it is not annotated, it is not hosted as the primary J.regia reference genome.

Juglans regia 1.5

Download aligned reads (VCF):

Juglans regia

Juglans nigra

Juglans hindsli

Juglans microcarpa

g3 cover
Details
Program, Pipeline, Workflow or Method Name
Trinity, MUMmer, Samtools
Program Version
n/a
Date Performed
Thursday, June 14, 2018 - 17:00
Data Source
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