Summary
Name
Corylus avellana - Reference Genome (‘Tombul’)
Resource Type
Genome Assembly
Organism
Details
Program, Pipeline, Workflow or Method Name
MaSurCA
Program Version
3.2
Date Performed
Friday, January 29, 2021 - 11:54
Data Source
Description and Download
Corylus avellana L. cv. ‘Tombul’ genome project Hazelnuts are a highly valued food product worldwide, but production is threatened by emerging disease outbreaks and climate change, and limited genetic information is available for hazel species. We present a ~98% complete assembly of the European hazel genome, developed for the commercially important Turkish cultivar ‘Tombul’.The Tombul genome was generated using a hybrid approach; Illumina whole genome shotgun sequences & Oxford Nanopore Technologies MinION long reads were assembled de novo using MaSurCA 3.2. Contigs from this assembly were ordered into chromosome-sized scaffolds through chromosome conformational capture sequencing (Dovetail Genomics Chicago & HiC). Full details of the assembly and annotation methods are given in the genome paper: “A chromosome-scale genome assembly of European Hazel (Corylus avellana L.) reveals targets for crop improvement”, Lucas et al. 2020. Plant Journal, doi: 10.1111/tpj.15099 The chloroplast genome sequence from this variety was published previously and is available from NCBI Genbank (Accession ID MN082371.; Kahraman & Lucas 2019, BMC Genomics 20:874, doi: 10.1186/s12864-019-6253-5
Raw data accessions (European Nucleotide Archive Project ID PRJEB31933):
Illumina WGS reads – ERR3262066
Nanopore reads – ERR4852533, ERR4852778

Downloads

Genomic scaffolds
All Gene Models CDS (fasta format)
All Gene Models Protein (fasta format)
All Gene Models GFF (Fasta format)
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