[Archived] Quercus rubra - Transcriptome Assembly RO454_v2

Summary

Name	[Archived] Quercus rubra - Transcriptome Assembly RO454_v2
Resource Type	Transcriptome Assembly
Organism	Q. rubra (Northern Red Oak)
Data Source	Source Name : Quercus rubra 081508 Source Version : 081508
Date Performed	Thursday, August 14, 2008 - 21:00
Number of transcripts	28041
Average Transcript Length	delete_me
Program, Pipeline, Workflow or Method Name	SeqManPro
Program Version	8.0.2

Description and Download

Description:

This transcriptome assembly was originally hosted on the Fagaceae Genomics Web (FGW), which has now been archived. Sequence information is maintained here in downloadable format only.

FGW Name	RO454 Unigene V2
Date	2008-08-15
Software	SeqManPro
Software Version	8.0.2
Number of Contigs	28,041
Libraries Included in Assembly	2 (ROA, ROB)

Download assembled data:

	Contigs (fasta format) RO454_contigs_v2.contigs.fasta
	Ace file RO454_v2.ace

Raw data may be downloaded from NCBI SRA, linked below.

Library Description	Library Code	Platform	454 Reads	454 Bases
Red Oak above ground tissues	ROA	454 GS FLX	131,630	32,102,277
Red Oak below ground tissues	ROB	454 GS FLX	145,254	34,237,370