Summary
Name
Prunus serotina - Transcriptome Assembly
Resource Type
Transcriptome Assembly
Organism
Data Source
Source Name
: P_serotina-Carlson-454AllContigs.filtered.fna
Source Version
: 1.0
Source URI
: https://www.rosaceae.org/species/prunus/prunus_serotina/carlson_unigene_v1
Date Performed
Saturday, September 29, 2012 - 21:00
Number of transcripts
28,461
Average Transcript Length
806
Program, Pipeline, Workflow or Method Name
Newbler
Program Version
v2.5
Description and Download
Description: 

The Newbler assembly of 454 reads for Prunus serotina (Black Cherry) were compiled and analyzed by John Carlson's lab at Penn State University. Data was downloaded from the Genome Database for Rosaceae (GDR) on February 1st 2017.

Methods

Please see the original data source for sample collection, sequencing, and assembly methods. All assembled contigs were downloaded, and those > 100bp were used for further analyses.

Assembly Statistics

Number of raw reads 1,335,589
Number of aligned reads 1,149,700 (86.08%)
Number of Contigs 28,461
Contig Average Length (isotigs/large contigs) 806/913

Read Statistics

Raw read data can be downloaded from the original data source .

Give Feedback!