Summary
Name
[Archived] Castanea dentata - Transcriptome Assembly v081508 (CCall_v2)
Resource Type
Transcriptome Assembly
Organism
Ontology Browser
View Gene Ontology browser or KEGG Ontology browser for Castanea mollissima
Data Source
Date Performed
Friday, August 15, 2008 - 15:01
Number of transcripts
delete_me
Average Transcript Length
delete_me
Program, Pipeline, Workflow or Method Name
SeqManPro FGW
Program Version
SeqManPro
Description and Download
Description: 
This transcriptome assembly was originally hosted on the Fagaceae Genomics Web (FGW), which has now been archived. Sequence information is maintained here in downloadable format only. Publications: Barakat A, Staton M, Cheng CH, Park J, Yassin NB, Ficklin S, Yeh CC, Hebard F, Baier K, Powell W, Schuster SC. Chestnut resistance to the blight disease: insights from transcriptome analysis. BMC Plant Biology. 2012 Mar 19;12(1):1. Barakat A, DiLoreto DS, Zhang Y, Smith C, Baier K, Powell WA, Wheeler N, Sederoff R, Carlson JE. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC Plant Biology. 2009 May 9;9(1):1. Transcriptome Information
FGW NameCC454 Unigene V3
Date2008-08-15
SoftwareSeqManPro
Number of Contigs 48,335
Libraries Included in Assembly14
Download assembled data: Raw data from the 454 platform may be downloaded from NCBI SRA, linked below.
Library DescriptionLibrary CodePlatform454 Reads454 Bases
Chinese Chestnut blight canker tissueCCCanker454 GS FLX235,63526M
Chinese Chestnut healthy stem 1CCMHS454 GS FLX228,59459.6M
Chinese Chestnut healthy stem 2CCNHS454 GS FLX259,85967.2M
Chinese Chestnut whole plant tissues 1CCWP1454 GS FLX60,44515.8M
Chinese Chestnut whole plant tissues 2CCWP2454 GS FLX53,93914.1M
Raw data from the Sanger platform may be found by searching NCBI Genbank. Links to search results are provided below.
  • CMFMEa - Flower Library (213 sequences)
  • CMFMEb - Flower Library (1043 sequences)
  • CMFMEc - Flower Library (1030 sequences)
  • CMLMEa - Leaf Library (1029 sequences)
  • CMLMEb - Leaf Library (1316 sequences)
  • CMRMEa - Root Library (1379 sequences)
  • CMRMEb - Root Library (1071 sequences)
  • CMSMEa - Stem Library (1364 sequences)
  • CMSMEb - Stem Library (1035 sequences)
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