Sork, V. L., Fitz-Gibbon, S. T., Puiu, D., Crepeau, M., Gugger, P. F., Sherman, R., ... & Salzberg, S. L. (2016). First draft assembly and annotation of the genome of a California endemic oak Quercus lobata Née (Fagaceae). G3: Genes, Genomes, Genetics, g3-116.
Quercus lobata - Reference Genome
Resource Type
Genome Assembly

Quercus lobata Genome

Version 1.0 and 0.5

Sork VL, Fitz-Gibbon ST, Puiu D, Crepeau M, Gugger PF, Sherman R, Stevens K,
Langley CH, Pellegrini M, Salzberg SL. First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae). G3: Genes|Genomes|Genetics. 2016 Nov 1;6(11):3485-95.

More information can be found at the
Valley Oak Genome Project.

Go to JBrowse

The Valley Oak genome has two assemblies available. We are hosting genes and
genomic scaffolds from version 1.0, which has not been haplotyped reduced
and up to one third of the genome may be present in two copies. A haplotype
reduced version, 0.5, is also available from the
Valley Oak Genome
and as downloads below. In 0.5, most genomic regions are
represented once but up to 100Mb is missing. More information can be found
in the publication and the Valley Oak Genome Project page.


Version 0.5

Valley Oak Genome 0.5 (reduced) sequences

Valley Oak Genome 0.5 (reduced) annotation

SNPs and SMVs

Version 1.0

Valley Oak Genome 1.0 sequences

Valley Oak Genome 1.0 annotation

Program, Pipeline, Workflow or Method Name
Program Version
Date Performed
Thursday, April 6, 2017 - 21:00
Data Source
Source Name
: Qlobata_Genome1.0.fasta
Cross Reference
Give Feedback!