Tripal Galaxy Workflows
Galaxy Workflows
Only registered users can submit workflows. Please register an account.
This tool is in beta. If you find bugs or have problems, we'd appreciate hearing from you!
Quality Control - Perform trimming on raw next generation sequencing reads (Illumina only) with Trimmomatic and get a quality report from FastQC.
Sequence Analysis
-
Mapping - Map short next generation sequencing reads to a reference genome.
- Short Read Mapping using Bowtie2 (single-end)
- Short Read Mapping using Bowtie2 (paired-end)
- Short Read Mapping using HISAT2 (single-end) (available soon)
- Short Read Mapping using HISAT2 (paired-end) (available soon)
-
Functional Gene Annotation - Get predicted function of gene sequences.
Transcriptomics
-
RNA-Seq differential expression analysis (htseq-count, DESeq2)
Variant Analysis
Under Development