Acer saccharum

Summary

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Summary

Resource Type	Organism
Abbreviation	A. saccharum
Genus	Acer
Species	saccharum
Common Name	Sugar Maple
Organism Image
Cross Reference	NCBITaxon:4024
Description	Other Common Names: rock maple, hard maple Order: Sapindales Family: Aceraceae Chromosome Number: 2n=26 Acer saccharum, also known as sugar maple, is a deciduous tree native to Missouri that can grow to upwards of 80 feet. Acer saccharum has no major insect or other pest problems and is used a lot in parks and on the side of streets due to its great fall color. Sugar maple is a major component in syrup production due to its sap having twice the sugar content as other maples. Source USDA

Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Gene Expression Profiles

Name	Program	Date Constructed
Sugar Maple - Abiotic Stress Gene Expression	HTSeq; RPKM	Apr 18th, 2016

Transcriptome

Name	Program	Date Constructed
Acer saccharum - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST	Feb 24th, 2016
[Archived] Acer saccharum - Transcriptome Assembly v010515	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Jan 5th, 2015

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Acer saccharum - peptides InterProScan	InterProScan	Mar 10th, 2016
Acer saccharum - mRNA BLASTX against TrEMBL	blastx	Mar 10th, 2016
Acer saccharum - mRNA BLASTX against SwissProt	blastx	Mar 10th, 2016
Acer saccharum - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST	Feb 24th, 2016
Sugar Maple - Abiotic Stress Gene Expression	HTSeq; RPKM	Apr 18th, 2016
Simple Sequence Repeats (SSR) prediction ( A. saccharum)	SSR prediction pipeline	Jul 5th, 2018
Simple Sequence Repeats (SSR) polymorphism confirmation (A. saccharum)	SSR polymorphic test ( A. saccharum)	Aug 16th, 2018
[Archived] Acer saccharum - Transcriptome Assembly v010515	Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST	Jan 5th, 2015

Biological Samples

Name	Tissue	Treatment	Description
SM1	various	various abiotic stressors	Sugar Maple - pooled seedling leaf RNAs from various stress treatments
SM125	leaf	ozone (125ppb)	Sugar Maple - pooled seedling leaf RNAs, 125 ppb ozone
SM-125-14	leaf	ozone (125ppb) 14 days	seedlings exposed to ozone (125ppb) for 14 days (6 pooled)
SM-125-28	leaf	ozone (125ppb) 28 days	seedlings exposed to ozone (125ppb) for 28 days (6 pooled)
SM-125-7	leaf	ozone (125ppb) 7 hours	seedlings exposed to ozone (125ppb) for 7 hours (6 pooled)
SM225	leaf	ozone (225ppb)	Sugar Maple - pooled seedling leaf RNAs, 225 ppb ozone
SM-225-14	leaf	ozone (225ppb) 14 days	seedlings exposed to ozone (225ppb) for 14 days (6 pooled)
SM-225-28	leaf	ozone (225ppb) 28 days	seedlings exposed to ozone (225ppb) for 28 days (6 pooled)
SM-225-7	leaf	ozone (225ppb) 7 hours	seedlings exposed to ozone (225ppb) for 7 hours (6 pooled)
SM80	leaf	ozone (80ppb)	Sugar Maple - pooled seedling leaf RNAs, 80 ppb ozone

Pages

Predicted SSRS (genomic)

microsatellite:

There are 1514 SSR markers associated with 1514 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction ( A. saccharum)

You can search for markers below: the form will return the gene features they are associated with.

Gene Ontology Browser

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