Summary
Resource Type
Organism
Abbreviation
A. rubra
Genus
Alnus
Species
rubra
Common Name
Red Alder
Description

Order: Fagales
Family: Betulaceae

Cross Reference
Transcriptome
NameProgramDate Constructed
de novo Red Alder (Alnus rubra)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-ESTFeb 18th, 2016
Analysis Details
Provides detailed information on the programs used to assemble and annotate the data.
NameProgramDate Constructed
Interpro Analysis of Red Alder (Alnus rubra)InterProScanFeb 24th, 2016
Red Alder (blastx against TrEMBL)blastxApr 4th, 2016
Red Alder (blastx against sprot)blastxMar 1st, 2016
de novo Red Alder (Alnus rubra)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-ESTFeb 18th, 2016
Biological Samples
NameTissueTreatmentDescription
RA1Not setNot setRed Alder - pooled seedling leaf RNAs from ozone treatments