Alnus rubra

Summary

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Summary

Resource Type	Organism
Abbreviation	A. rubra
Genus	Alnus
Species	rubra
Common Name	Red Alder
Organism Image
Cross Reference	NCBITaxon:109069
Description	Order: Fagales Family: Betulaceae The Red Alder is a tall tree native to North America, The tree is abundantly found throughout the west coast of North America, The tree produces many seeds that are primarily dispersed through wind. However, the seeds need mineral rich soil to germinate. Areas effected by fires or logging are prime areas for this tree to grow. The tree also has a diverse range of commercial uses including dye, woodworking, and restoration of ravaged lands.

Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Transcriptome

Name	Program	Date Constructed
Alnus rubra - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST	Feb 18th, 2016

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Alnus rubra - peptides InterProScan	InterProScan	Feb 24th, 2016
Alnus rubra - mRNA BLASTX against TrEMBL	blastx	Mar 1st, 2016
Alnus rubra - Transcriptome Assembly	Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST	Feb 18th, 2016
Simple Sequence Repeats (SSR) prediction (A. rubra)	SSR prediction pipeline	Jul 5th, 2018
Alnus rubra - mRNA BLASTX against TrEMBL	blastx	Apr 4th, 2016

Biological Samples

Name	Tissue	Treatment	Description
RA1	leaf	ozone stress	Red Alder - pooled seedling leaf RNAs from ozone treatments

Predicted SSRS (genomic)

microsatellite:

There are 239 SSR markers associated with 239 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction (A. rubra)

You can search for markers below: the form will return the gene features they are associated with.

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