Alnus rubra

Summary

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Summary

Resource Type	Organism
Abbreviation	A. rubra
Genus	Alnus
Species	rubra
Common Name	Red Alder
Description	Order: Fagales Family: Betulaceae
Cross Reference	NCBITaxon:109069

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Transcriptome

Name	Program	Date Constructed
de novo Red Alder (Alnus rubra)	Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST	Feb 18th, 2016

Analysis Details

Provides detailed information on the programs used to assemble and annotate the data.

Name	Program	Date Constructed
Interpro Analysis of Red Alder (Alnus rubra)	InterProScan	Feb 24th, 2016
Red Alder (blastx against TrEMBL)	blastx	Apr 4th, 2016
Red Alder (blastx against sprot)	blastx	Mar 1st, 2016
de novo Red Alder (Alnus rubra)	Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST	Feb 18th, 2016

Biological Samples

Name	Tissue	Treatment	Description
RA1	Not set	Not set	Red Alder - pooled seedling leaf RNAs from ozone treatments