Quercus alba

Summary
Reference Genome
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Feature Search
Gene Expression Profiles
Transcriptome
Analysis Details
Biological Samples
Mapping Population
Predicted SSRS (genomic)
Libraries
Physical and Genetic Map
Gene Ontology Browser
KEGG Browser
Summary
Resource Type
Organism
Abbreviation
Q. alba
Genus
Quercus
Species
alba
Common Name
White Oak
Organism Image
Cross Reference
NCBITaxon:3513
Description
Order: Fagales Family: Fagaceae Chromosome Number: 2n=24 Links: Quercus Portal - a genetic and genomic web resource for Quercus
Feature Search

You can search this organism’s features in the database by entering search terms in the box. You can search by feature name or annotation.

Examples: Heat Shock, IPR020575, GO:0016049, etc.
Transcriptome
NameProgramDate Constructed
Quercus alba - Transcriptome Assembly WO454_v2SeqManProAug 15th, 2008
Analysis Details
Provides detailed information on the programs used to assemble and annotate the data.
NameProgramDate Constructed
Quercus alba - peptides InterProScanInterProScanMar 28th, 2016
Quercus alba - mRNA BLASTX against SwissProtblastxApr 4th, 2016
Quercus alba - mRNA BLASTX against TrEMBLblastxApr 15th, 2016
Simple Sequence Repeats (SSR) prediction (Q. alba)SSR prediction pipelineJul 5th, 2018
Quercus alba - Transcriptome Assembly WO454_v2SeqManProAug 15th, 2008
Simple Sequence Repeats (SSR) polymorphism confirmation (Q. alba)SSR polymorphic test (Q. alba)Aug 16th, 2018
Biological Samples
NameTissueTreatmentDescription
White Oak Above GroundNot setNot setESTS derived from combined tissues of a mature tree in Penn State arboretum. Combined tissues include flowers, fruit, stems, buds, phloem and cambium.
White Oak Below GroundNot setNot setESTS derived from roots of a a mature tree in Penn State arboretum.
Mapping Population

Locations: University of Tennessee, Ames Plantation in Ames, TN and East Tennessee State Nursery

Principal Investigators: Scott Schlarbaum (University of Tennessee), Oliver Gailing (Michigan Tech)

A White Oak population that has been under development for many years at the Ame's Plantation (University of Tennessee). The plantation is being maintained by the UT Tree Improvement Program, including mowing and is protected against deer by electric fence and rabbits by tree shelters or mesh. Dr. Gailing has analyzed 200 trees in the population and found 50 full-sibling trees. Assuming the same rate of detection, the plantation currently contains between 200-250 full siblings. Approximately 200 seedlings from the mother tree were grown at the East Tennessee State Nursery in 2013. They were lifted and containerized for future sampling.

Please contact us for more information or if you are interested in utilizing this population for research. Genotype and phenotype information will be posted here when publicly available.

Predicted SSRS (genomic)
microsatellite: 
There are 84 SSR markers associated with 84 features in this organism.

The complete list of SSR markers, their properties, and primers to amplify then can be found on the corresponding analysis page.

Analysis Name
Simple Sequence Repeats (SSR) prediction (Q. alba)

You can search for markers below: the form will return the gene features they are associated with.

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