RNA-Seq datasets for multiple species are available. MiSeq and HiSeq reads from multiple libraries were cleaned with Trimmomatic and assembled by Trinity. CD-hit was used to collapse highly similar reads into a single sequence. Older transcriptomes were built with SeqMan Pro.

TranscriptomeDate RunStatusOrganismsort descendingProgramTranscripts
Acer saccharum 02241602-24-2016currentAcer saccharum (Sugar Maple)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST117861
Acer saccharum 01051501-05-2015archivedAcer saccharum (Sugar Maple)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST128406
Alnus rubra 02181602-18-2016currentAlnus rubra (Red Alder)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST29113
Alnus rhombifolia 02181602-18-2016currentAlnus rhombifolia (White Alder)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST26186
Castanea dentata 08150808-15-2008currentCastanea dentata (American Chestnut)SeqManPro45288
Cornus_florida_1206201612-06-2016currentCornus florida (Dogwood)Newbler (Roche)43158
Fagus grandifolia 08150808-15-2008currentFagus grandifolia (American Beech)SeqManPro8319
Fraxinus excelsior 08-02-1608-02-2016currentFraxinus excelsior (European Ash)Maker, Augustus
Green Ash Ozone12-19-2012archivedFraxinus pennsylvanica (Green Ash)Trinity63,113
Fraxinus pennsylvanica 12031312-03-2013currentFraxinus pennsylvanica (Green Ash)Trinity; CD-HIT-EST107611
Gleditsia triacanthos 08261408-26-2014currentGleditsia triacanthos (Honeylocust)Trinity; CD-HIT-EST56845
Hydrangea_macrophylla_1207201612-07-2016currentHydrangea macrophylla (Hydrangea)Newbler (Roche)42682
Black Walnut Ozone12-19-2012archivedJuglans nigra (Black Walnut)Trinity61,770
Juglans nigra 12031312-03-2013currentJuglans nigra (Black Walnut)Trinity; CD-HIT-EST78834
Liquidambar styraciflua 01051501-05-2015currentLiquidambar styraciflua (American Sweetgum)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST127406
Liriodendron tulipifera 12031312-03-2013archivedLiriodendron tulipifera (Tulip Poplar)Trinity; CD-HIT-EST53346
Liriodendron tulipifera 10131410-13-2014currentLiriodendron tulipifera (Tulip Poplar)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST58249
Nyssa sylvatica 12031312-03-2013archivedNyssa sylvatica (Blackgum)Trinity; CD-HIT-EST55630
Nyssa sylvatica 10131410-13-2014currentNyssa sylvatica (Blackgum)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST138819
Prunus serotina 9-30-1209-30-2012currentPrunus serotina (Black Cherry)Newbler28,461
Quercus alba 08150808-15-2008currentQuercus alba (White Oak)SeqManPro22102
Quercus rubra 12031312-03-2013currentQuercus rubra (Northern Red Oak)Trinity; CD-HIT-EST52662
Quercus rubra 08150808-15-2008archivedQuercus rubra (Northern Red Oak)SeqManPro28041
Red Oak Ozone10-10-2011archivedQuercus rubra (Northern Red Oak)Trinity45,857