RNA-Seq datasets for multiple species are available. MiSeq and HiSeq reads from multiple libraries were cleaned with Trimmomatic and assembled by Trinity. CD-hit was used to collapse highly similar reads into a single sequence. Older transcriptomes were built with SeqMan Pro.

Transcriptomesort descendingOrganismProgramTranscriptsDate Run
Acer saccharum - Transcriptome AssemblyAcer saccharum (Sugar Maple)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST11786102-24-2016
Alnus rhombifolia - Transcriptome AssemblyAlnus rhombifolia (White Alder)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST2618602-18-2016
Alnus rubra - Transcriptome AssemblyAlnus rubra (Red Alder)Trinity, built under bowtie-1.0.1 and samtools-0.1.19; CD-HIT-EST2911302-18-2016
[Archived] Acer saccharum - Transcriptome Assembly v010515Acer saccharum (Sugar Maple)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST12840601-05-2015
[Archived] Castanea dentata - Transcriptome Assembly AC454_v3Castanea dentata (American Chestnut)SeqManPro4528808-15-2008
[Archived] Liriodendron tulipifera - Transcriptome Assembly v120313Liriodendron tulipifera (Tulip Poplar)Trinity; CD-HIT-EST5334612-03-2013
[Archived] Nyssa sylvatica - Transcriptome Assembly v120313Nyssa sylvatica (Blackgum)Trinity; CD-HIT-EST5563012-03-2013
[Archived] Quercus rubra - Transcriptome Assembly - OzoneQuercus rubra (Northern Red Oak)Trinity4585710-10-2011
[Archived] Quercus rubra - Transcriptome Assembly RO454_v2Quercus rubra (Northern Red Oak)SeqManPro2804108-15-2008
Cornus florida - Transcriptome AssemblyCornus florida (Dogwood)Newbler (Roche)4315812-06-2016
Fagus grandifolia - Transcriptome AssemblyFagus grandifolia (American Beech)SeqManPro831908-15-2008
Fraxinus pennsylvanica - Transcriptome AssemblyFraxinus pennsylvanica (Green Ash)Trinity; CD-HIT-EST10761112-03-2013
Gleditsia triacanthos - Transcriptome AssemblyGleditsia triacanthos (Honeylocust)Trinity; CD-HIT-EST5684508-26-2014
Hydrangea macrophylla - Transcriptome AssemblyHydrangea macrophylla (Hydrangea)Newbler (Roche)4268212-07-2016
Juglans nigra - Transcriptome AssemblyJuglans nigra (Black Walnut)Trinity; CD-HIT-EST7883412-03-2013
Liquidambar styraciflua - Transcriptome AssemblyLiquidambar styraciflua (American Sweetgum)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST12740601-05-2015
Liriodendron tulipifera - Transcriptome AssemblyLiriodendron tulipifera (Tulip Poplar)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST5824910-13-2014
Nyssa sylvatica - Transcriptome AssemblyNyssa sylvatica (Blackgum)Trinity, built under bowtie-1.0.1 and samtools-1.1; CD-HIT-EST13881910-13-2014
Prunus serotina - Transcriptome Assembly Prunus serotina (Black Cherry)Newbler2846109-30-2012
Quercus alba - Transcriptome Assembly WO454_v2Quercus alba (White Oak)SeqManPro2210208-15-2008
Quercus rubra - Transcriptome AssemblyQuercus rubra (Northern Red Oak)Trinity; CD-HIT-EST5266212-03-2013
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